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Department of Bioorganic Chemistry


The stereoviews of the cyclic branched RNAs from snapshots at 96 ps (the last fully constrained structure) and at 226 ps (the last unconstrained structure) from the MD simulation in water at 284 K. All water molecules, sodium ions, and hydrogen atoms have been omitted for clarity. All phosphorous atoms are shown as open circles and the phosphate backbone is shown with thick lines. Panel (A): Hexamer 1 A-form at 96 ps. Panel (B): Hexamer 1 A-form at 226 ps. Panel (C): Hexamer 1 B-form at 96 ps. Panel (D): Hexamer 1 B-form at 226 ps. Panel (E): Heptamer 2 at 96 ps. Panel (F): Heptamer 2 at 226 ps.


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